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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034121 Open in IMG/M |
| Scaffold ID | Ga0335058_0000345 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36817 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (83.64%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001706 | Metagenome / Metatranscriptome | 648 | Y |
| F075839 | Metagenome / Metatranscriptome | 118 | N |
| F085350 | Metagenome | 111 | N |
| F102845 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335058_0000345_11140_11295 | F102845 | AGAAG | MATAKKAVAKGSVAKTFDINKLIPQMTKQDAQSLAMLKKKYGAKVYKSYDK |
| Ga0335058_0000345_11432_11746 | F001706 | AGGAG | MGLHQIQTHAEYVEGCFGCKASTLELGTGDATRDISDKKWTSELQAYRDAKAQGIQPGGTSRAHVEAAYAASVTLGTAYNSETMPKAHQINKKTAEVMKEIGQV |
| Ga0335058_0000345_28026_28370 | F075839 | AGGAG | MNNEVTITGKIKNVRTFTGSKGTMVTGWFDQREISAFSNGEADRQVYVCGFNIVALDDSTVGEILGVTRAGQEQSDLVTLKGRLVTRFDRRQNVEESARKAPQLQLEVHEVVTN |
| Ga0335058_0000345_36109_36423 | F085350 | GAG | MNESENALPPLDHTFWEHLEHLDFAIGIQVSEDRLLDVVSALQDIYDTLVKGDLEDAKMCTTALAAILVASKYGKAEQVWEEFSVKEAMTTLDSHLKEILDEES |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |