NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335058_0000301

Scaffold Ga0335058_0000301


Overview

Basic Information
Taxon OID3300034121 Open in IMG/M
Scaffold IDGa0335058_0000301 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39093
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (68.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002130Metagenome / Metatranscriptome591Y
F002997Metagenome / Metatranscriptome514Y
F024113Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0335058_0000301_20277_20759F024113GGAMAVFSRNSLAQVSGFDNPILAGELVWDQQTYWNLSFTSLGLPVNLTGATIDAQIVRRNLTNIQDTRNGLTFDIADYSPTPAAIPLTITNIAAVAGTCTLVIDAGAWGLMATDPQLDINAQSCVGYSGRVKVSFPAAGANPADDMIIFLLFLVRSDGVVVL
Ga0335058_0000301_26157_26765F002130N/AMSDKPASIIDKVLGYVDSPFKLFAILVMGVVAFAGYFLWQNQTFMFDAYKESKKLPEINAARADDASSMLLKKTGATVVAVFKVNPLFNSRVLYKAYTKDGRDKTIEDIDVGLFSQNTANNSDVVKLMTNEIPCSEYRYAQSEVGLWYIEKGVTFTCRVSVPPDSHRFVGQVTVGWAEPPQDIQQVKFMLEIASAMLTKRGN
Ga0335058_0000301_8105_8449F002997N/AMSIARFENININNLTFTKSAFGESATVQALWFATRARVSTVANSLKIADKYRLYQDMVNLTLNYTPNTKTIVDNQHLFSITYRGKDWRIDSVRESDDRMTVTLLCYRSDPVTAV
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