Scaffold Ga0335056_0229540

Overview

Basic Information

• Taxon OID: 3300034120
• Scaffold ID: Ga0335056_0229540
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1057
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F018135	Metagenome	236	Y
F029046	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335056_0229540_187_348	F029046	GAGG	MQLQEIDTLQDLKLWVEENMPSATVTEDMYGTLVIHTNLVSTMGGYLHEREGE
Ga0335056_0229540_29_187	F018135	N/A	MTIERVRHSGAYVISELAGEGAGAYLFTRTYYGYTLREAKAQFKLALESEGK
Ga0335056_0229540_786_944	F000821	AGGAGG	MNEEYLKAKFDLCIDQAEKNIKEEDIALAIKNLERANSAMARLFGLEEEIDD