NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335056_0039548

Scaffold Ga0335056_0039548


Overview

Basic Information
Taxon OID3300034120 Open in IMG/M
Scaffold IDGa0335056_0039548 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3152
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007466Metagenome350Y
F019997Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0335056_0039548_267_1514F007466AGGMTQWAPVWRVKIAGVDVTDSVLANLTITSGRTNIYEQAQAGYCSVNLIIFNQAALPYEINDTISIEVQDTSAVYVPIFGGSIVDISVSVSQVGSTAYTQEVTITALGALARLQKALTNGVLSHDFDGDQIETILNQVLLSQWQQVPAALQWNTYDPTTTWATAGNNGIGEIDTPGNYELAQRSSDRIIIYDLVAALASSGLGYLYEDASGLISYADSTHRTNYLAANGYTDLTANHALGQGITIKTRAGDVRNDITISYGQNSTNQVSDTDPTSIALYGDLSQIFTTTLRHLHDAEDQAAFYLALRAYPQPIFDSITYALTNPELDNGDRNALINVFMGQPIALNNLPTNMSSGTFQGFVEGWTFRASYNQLDITLLMSPLAYSLQAMRWNDVPINEAWNTVSPTLQWQYATIVS
Ga0335056_0039548_3006_3152F019997AGGAGMNELKSAGASWLRASISAVAALYMSGISDPKVLVNAFLAGLLAPAAKFL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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