NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335056_0032472

Scaffold Ga0335056_0032472


Overview

Basic Information
Taxon OID3300034120 Open in IMG/M
Scaffold IDGa0335056_0032472 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3539
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055432Metagenome138N
F056339Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0335056_0032472_386_631F056339AGGAMPIYKYDVCFPNSQSVVRSFPSLVRARDFMRIMSADDLPCLVMPWDENSSPLIVRRVKTPRKYHTQKAVKVDILGPSQQKG
Ga0335056_0032472_650_1030F055432AGGAGMKNLSFDDVAFLDVYQHAVAVATRADVVRFLSADPDERSSREFCDSMDDVYSSIADAYEVWFCALKHARTNKGMTVGKLSAALANLPQDLPVLIWDAGTRLGIAHIDDSFIEDEYPRLELNTDRDD
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