Scaffold Ga0335056

Basic Information
Taxon OID	3300034120 Open in IMG/M
Scaffold ID	Ga0335056_0002015 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034120 Open in IMG/M

Scaffold ID

Ga0335056_0002015 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14422
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (70.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14422

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (70.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014089	Metagenome / Metatranscriptome	266	Y
F016643	Metagenome	245	Y
F033645	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335056_0002015_12014_12676	F033645	AGGCGG	MGFLDNYEDVAARIKRFWETHPAGRIENTIIDFNAEKGYVLVQTQIFKEYEDEKASAIDYAFGNVATYNVQMKKFFVEDTVTSSIGRCIGLLLGTDKRPTRQDMEKVETISTKVAQSTSEDYDPWSKKWGEIPSFETAAEAENSGIPSFGSSVDEIANQLGGQLIEEAPQCSHGHMIWKQAKEDAAKNWGGYFCTERTKATQCTPRWYVLASDGKWKPQV
Ga0335056_0002015_12673_12864	F014089	GGA	MSDIIEIIYPQAKIAKLLQNGEVIAEYKVEQCDSCERLLKLDSFGYQKGQGGEKLLWLCGSCR
Ga0335056_0002015_8073_9317	F016643	GGAG	MTLWSPVWRVKINGLEYQNYALANLTINTGRTNIYEQAQAGYVNLQLINLEQTPITASINDAVTIELQDSTAAFVPIFGGSITDITVEVTTAGSVGINQTISIIALGALSRLQKALTEGVLSDDLDGVQIETILTDLLVNNWSEVPAALTWADYPPSVTWATAENTGLGEIDAGNYELENRGADVVDVYSLVSALATSGLGYLYEDAFGRISYADSTHRSIYLSTFGYTDVDAEQAVINGMQINTRAGDVRNDITLRYGNTSSLEKTATDPISIGIYGKLAQIISTTIKHAVDAQDQADFYLTLRATPQPMMNAITFELTNPELDDADRDSMINIFMGLPLRISNLPLNMSSGTFAGFVEGWTFRAAYNSVSVTALLSPLAYSLQALKWEQVPIGEQWNTISGTLEWQDATVVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335056_0002015

Overview

Ecosystem & Geography

Associated Families

Sequences