Scaffold Ga0335056_0000030

Overview

Basic Information

• Taxon OID: 3300034120
• Scaffold ID: Ga0335056_0000030
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85493
• Total Scaffold Genes: 147
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (48.30%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F001018	Metagenome / Metatranscriptome	804	Y
F002876	Metagenome / Metatranscriptome	524	Y
F027818	Metagenome	193	Y
F029405	Metagenome / Metatranscriptome	188	Y
F043888	Metagenome	155	Y
F055679	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335056_0000030_10450_11151	F001018	N/A	MTQITSTKLNELSVIKLYEHYNALEKSLPLLTPESQDLAKAELESCANLRSEKIDRIYYAMAAHDDALERIKKETELITQAKRHHESQLRSLKGLLNWLKRSLPFDTNKITGRNYQFTLVKKRELTVEVSSDPDVWSSEHRQLYCVEEQVTTTKEIVLRSMSGEVLSTRTEPVTKTKVLPNLDAIRDAYQAGQLLPSGVKVCQEYSIRSKRIYVEPHVELQASEYPGQFLPED
Ga0335056_0000030_31848_32039	F002876	N/A	MACKKSQLVSAINSFGSARATGDGNLIAFAVELIGKLVDTLEFEPESEEEAITPEVVAEETAE
Ga0335056_0000030_37171_37596	F000973	GAGG	MNYGLRKGLEDIATELKGIRNILSSMWHSRYGEDETNILNPQIYADEYVSTEECAKRLGVSDQTIRNWISIGRKTPDKGWVEGVHYVNISPDPNRKAVIRIPWNQMIQAFCKNRQSDLWDFIGNTGARSTKYKTTNPDRLV
Ga0335056_0000030_61728_62621	F043888	GAGG	MGGGGTRVEYKSPEIPRDNTFAEYLKYQQEREARAEQRADTEKAEQKAAAEARKSSGAAAYSGMRSGIESQLRQGLISYNDAASQLRDYASKYDLSPPEQDVAGLTDIYTKELLPGRRATGITSAYKEVLGREAKEEEKTEALERFNQGYYSTVQDLRDSLAKSTEYQDKFNNSYLDNYYDTMYGKQATDAAGKKTGQRTFKFDKNFLPTYADATKARAGVQLPNFADSFTGTPSEIEENLQNVRDTRKYLYSAGLTNLQGEIDKETQKLKNEGSKEVAKINSFGSVASNLVSGFWS
Ga0335056_0000030_72459_72761	F055679	AGG	MELSMDLTTGWKQHTNVPGGYHLVYVDALVGEISIVTGPQGSGLMASNNPGQEPTYEVWFPGMRNPTGHLTLDEIKGIIKYMRQCEEERIWTACSEYEND
Ga0335056_0000030_74042_74422	F027818	N/A	MLSNTIIGNITYMEKVLHEGREFLAITMAVNDMYDGACRVRFNNSNGLLTAYNNGTLVVGHQLILSQYDVRISSIRTHYLKDGLMHQLKYPELALTRVRAIIGAAPRPKPEVVAPTIEPTLEEIAF
Ga0335056_0000030_75864_76067	F029405	N/A	MRDPDFIDEQRNADALDAMADRAYELEEAMREAEQDGWTGVFNDEISNEERYACDHYNERYVINDYH