NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335054_0094322

Scaffold Ga0335054_0094322


Overview

Basic Information
Taxon OID3300034119 Open in IMG/M
Scaffold IDGa0335054_0094322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1842
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028146Metagenome192N
F081254Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0335054_0094322_1579_1842F028146N/AMETTHEIKKAAVIAAAAEQVRSLLETHYDAMRKAAEESFVDDETQAEPKAKASFTIEWDALAMAPTVTVKVGWSVRFKDESEAVVDPL
Ga0335054_0094322_447_857F081254AGGAMTDQLGQEIIAELRAIRALLANKPAAPAAASAPAPAGAPKEIPQPTEIVADPGSVEVHFGKNKGTALRSLGAKSVEWYAQEPEPRIGNNGKPFPPRAEDVRLRNAARQLVHGQRGTLAAGSKVTLVTETLTEEVPF

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