Basic Information | |
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Taxon OID | 3300034119 Open in IMG/M |
Scaffold ID | Ga0335054_0072027 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2131 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003212 | Metagenome / Metatranscriptome | 500 | Y |
F005558 | Metagenome | 396 | Y |
F018135 | Metagenome | 236 | Y |
F027417 | Metagenome | 194 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335054_0072027_1124_1288 | F003212 | AGGAG | MKDRYLITLDVETYDGDPRWWDWEKLSTGEDVIKIISSDFKGRVLPTSEGESNE |
Ga0335054_0072027_1281_1424 | F005558 | GGAG | MSRDLSWAELAELTHATQVEHFSFCLCEDNEGQENPYADCPKGDENE |
Ga0335054_0072027_346_501 | F018135 | GGAG | MTVEKVKSNGAYVLSDLVGEGAGEYLFTRTYYGYTLAQAKAQFRVELKEAK |
Ga0335054_0072027_898_1134 | F027417 | AGGAGG | MSYDYRVTFVTDYLTITTNVSLDLNDTTGNLSDEAYGRAAVKGMNNIEDEIGKIDETIINDITVTLILDDEEIELNER |
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