Scaffold Ga0335054_0072027

Overview

Basic Information

• Taxon OID: 3300034119
• Scaffold ID: Ga0335054_0072027
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2131
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F005558	Metagenome	396	Y
F018135	Metagenome	236	Y
F027417	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335054_0072027_1124_1288	F003212	AGGAG	MKDRYLITLDVETYDGDPRWWDWEKLSTGEDVIKIISSDFKGRVLPTSEGESNE
Ga0335054_0072027_1281_1424	F005558	GGAG	MSRDLSWAELAELTHATQVEHFSFCLCEDNEGQENPYADCPKGDENE
Ga0335054_0072027_346_501	F018135	GGAG	MTVEKVKSNGAYVLSDLVGEGAGEYLFTRTYYGYTLAQAKAQFRVELKEAK
Ga0335054_0072027_898_1134	F027417	AGGAGG	MSYDYRVTFVTDYLTITTNVSLDLNDTTGNLSDEAYGRAAVKGMNNIEDEIGKIDETIINDITVTLILDDEEIELNER