NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335054_0011831

Scaffold Ga0335054_0011831


Overview

Basic Information
Taxon OID3300034119 Open in IMG/M
Scaffold IDGa0335054_0011831 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5313
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F030017Metagenome186Y
F104771Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335054_0011831_2227_2502F104771N/AMGKLFNDSEMYLDQEVLFYYEGEEYCWTGHYEVKQCGEEADWDYCGDSEVEVEIDTTKSITKFNEETNGWDDVTITNSLIYELVLHIERNL
Ga0335054_0011831_235_768F001775N/AMDQRIQIAILAFLGGVILTFVVYPRHEQETIYKFETVTKTDTLFVDKLETVYISKTKIKTEVLRDTILIDFKPQISQFTASFPFEHGSTSISGEVLGEVLKMTATNDYKLPVVTNTITNTETKTIIEKPKGLYLGAGVNSLLKPSASVSYLDNKYLFQYQYQPMEKIHQIGVSKKLF
Ga0335054_0011831_3907_4239F030017N/AVETQEIIDEIKRLYIEGFTRKKIAAKLGLDAEKVGYLLYTKLKLHEIYPRKLMDENIFQILSDHQISRILTLATYGYCCREIAEDQNIEFRKVKKLLDVAQSKNMIEKKI
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