Scaffold Ga0335054_0008611

Overview

Basic Information

• Taxon OID: 3300034119
• Scaffold ID: Ga0335054_0008611
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6155
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009505	Metagenome / Metatranscriptome	317	Y
F079389	Metagenome / Metatranscriptome	116	Y
F083944	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335054_0008611_1952_2125	F083944	AGGAG	MSDIRILKGDGKRAEDVTGELGDRIKALVYEYSGRMPLAAAVGVLHLVAYEITTDSD
Ga0335054_0008611_2324_2602	F079389	GAG	MMQAAKDRGWHLSLTAEHYGMHRSSIAAACERFGIVLPMHQFSPQRVSKKSKGWVDICDGETKPKVKLSASPAAIQRAIDDIERQKRLQALG
Ga0335054_0008611_4036_4251	F009505	GGGGG	MIGRMVGMLIGRKLKEKAVDAVLDKVNLPDPVEGAIKIAATGNVGDLLGSMGKDMAQEAVLGAVLKKKPKK