Scaffold Ga0335054_0003785

Overview

Basic Information

• Taxon OID: 3300034119
• Scaffold ID: Ga0335054_0003785
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8953
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001731	Metagenome	644	Y
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335054_0003785_3_449	F000903	GAG	MNRIEEIQCMVSAIEHCQDRDADHATRWHKTPSWFEYVAQMAESMAAEWTVAKRLGYDYKPGTTWDKSKADVGEHIEVKWSANPDSNLWIQESDRHDRDIAVLVVGNTPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLT
Ga0335054_0003785_3715_4962	F001731	N/A	MTIFNPVWKVIIGGVEYQTAILANLTITSGRTNIYEQATAGYTNLEIINLDQSNVPIQINDALTIELQDSTSTFVPIFGGSVVEVGISVAEVGSVDYAQRINIIALGALARLPKALTDGVLSKDFDGDQIYEILQAVLFDSWQEVPAATTWATYDPTIQWQDAENSGLGEIDRPGNYELAARSSNRTDVYSLVSALATSGLGYIFEDAQGRIGYADSTHRTNYLAANGYVDLTANHAIASGLSIQQRAGDVRNAITIKYNATSSAEESASDADSIALYGQLAQIISTTLHNSTDAEDQANFYLGLRAYPRFNFNNITFELTNPEIDDADRDALINVFMGMPVNIANLPLNMNSGDFLGFVEGWTFSARYNQVSISMIVSPIAFSLQAMRWNDVPIVEAWNTVNPTLDWINATIVA
Ga0335054_0003785_446_655	F000403	GAGG	MGATSMSEYVEIIYPQEMMAKLMCNGEIVEEYKIEQCDKCSQLRRLDKFGYQKGYDSKDNIIWFCGECR
Ga0335054_0003785_637_1290	F012452	AGAAGG	MAGFLENYEGNKERTDRWIITFPKGRLEAQIIEFNAEKGYVLVQAKAWRNQEETEPAAIDYAFGYREAYNPNMKRWFVEDTVTSALMRVMALVMGGTEKATKETMEQVKVNDATKPQDYDYWTTKFGDVPSYKTADEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRVWRTGTSAKTGKEWANFSCVGKKPDQCDPLWYVFTSRGKWEPQV