Scaffold Ga0335054_0000199

Overview

Basic Information

• Taxon OID: 3300034119
• Scaffold ID: Ga0335054_0000199
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33242
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (82.98%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008183	Metagenome / Metatranscriptome	337	Y
F025940	Metagenome	199	Y
F074583	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335054_0000199_16035_16250	F008183	GGAG	MSEGNEIDLVKYGVLWQKVQDMDKKVDKMERNVEELLALANKGRGGLWFGMTIVSGASALVGFLASHWKGS
Ga0335054_0000199_26434_26856	F025940	GAGG	MATAATSRRLNLTRDQLATFLTDQQQIRQFELLFSTVDQIQVIIGTDFEYQADTAAATANEALAQISVLAQDTAVDDAVLNAKVQQALDAIPRLAQALDLLALAPVRNNIELAHDVNGILPYANQTASVRSNQVLTWLSM
Ga0335054_0000199_5894_6076	F074583	AGG	MTKQRETPNFATWQHDTLAKFATEVYIRLQDEQAANEQLRMDLKDAMKLARIENMKDNTQ