Scaffold Ga0335053_0207995

Overview

Basic Information

• Taxon OID: 3300034118
• Scaffold ID: Ga0335053_0207995
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1281
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F002302	Metagenome	573	Y
F028494	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335053_0207995_3_314	F002302	N/A	MSYTDLFNEAIDDVTATLTAVSGLRVVNDPTKLAPNCVYLDAPNFTTFAGNGNIVRLEFPIKVIGSGPAGLPVLRSILSIVASVLGSKIIVMAGRPSSFEIGGA
Ga0335053_0207995_314_946	F001326	AGG	MATYSVTNKYLIDNYAVLQLLTPSEIAVGQSITVAGVDATFNGTYTVRALPQYLYIGIDTEGDLLYDYQVPIADQVLYAKTASDVDRTAASGTVSYDPVCTWVTAAQVMSFLGITISNPSDDYTLLTQSTSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA
Ga0335053_0207995_968_1234	F028494	N/A	MGVNAAGTANITQLNTFNPFGLNLVADRNFATNTMVVAKASAIEFYEQVRGLMSVEAPSTLGRVFSYYGYVATFIADSDLVKSITVSP