Scaffold Ga0335053_0059200

Overview

Basic Information

• Taxon OID: 3300034118
• Scaffold ID: Ga0335053_0059200
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2715
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F049581	Metagenome	146	Y
F072277	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335053_0059200_1363_1497	F072277	AGGAGG	MEKCVKCKVAIEKMEVFPKGVCLACYAVEFEKEFQSALKIARLK
Ga0335053_0059200_2030_2362	F049581	GAGG	MTTTTGRPFNEDELISQIGHMNILAISGGRVIVVKNNDGETIEVELKCGAGYRVSIALGWDDTYTVTRQYVRKGTVFNKGTVEGVYCENIGEVAYKASCFRSYEFGKAVA
Ga0335053_0059200_2601_2714	F005558	GGAGG	MSQQSMSWAELAELTHATQVEKFNFCTCEDNEGNENPY