Basic Information | |
---|---|
Taxon OID | 3300034118 Open in IMG/M |
Scaffold ID | Ga0335053_0049967 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2984 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F058592 | Metagenome / Metatranscriptome | 134 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335053_0049967_1349_1579 | F058592 | N/A | MVLLQVPSALTKYVVVAVGDTVMLAPVPADVPPHDVVYHFQLAPVPKLPPLTDSVVFLPLQIVVVPVIEVAGTDVS |
Ga0335053_0049967_1604_1834 | F058592 | N/A | MVLLQVPSALTKYVVVAVGDTVMLVPVPAEVPPHDDVYHFQLAPVPRLPPFTDSVVFLPRQIVLVPVIEDAGTDVS |
Ga0335053_0049967_1859_2089 | F058592 | N/A | MVLLHVPSALTKYVVVAVGDTVMLAPVPADVPPHDDVYHFQLAPVPRLPPLMLKVVFCPLQIVVVPVIEVAGTDVS |
Ga0335053_0049967_2624_2854 | F058592 | N/A | MVLLQVPSALTKYVVVAVGDTVMLAPVPADVPPHDDVYHFQLAPVPRLPPLTDSVVFLPRQIVLVPVIEDAGTEVS |
⦗Top⦘ |