NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335053_0049967

Scaffold Ga0335053_0049967


Overview

Basic Information
Taxon OID3300034118 Open in IMG/M
Scaffold IDGa0335053_0049967 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2984
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058592Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0335053_0049967_1349_1579F058592N/AMVLLQVPSALTKYVVVAVGDTVMLAPVPADVPPHDVVYHFQLAPVPKLPPLTDSVVFLPLQIVVVPVIEVAGTDVS
Ga0335053_0049967_1604_1834F058592N/AMVLLQVPSALTKYVVVAVGDTVMLVPVPAEVPPHDDVYHFQLAPVPRLPPFTDSVVFLPRQIVLVPVIEDAGTDVS
Ga0335053_0049967_1859_2089F058592N/AMVLLHVPSALTKYVVVAVGDTVMLAPVPADVPPHDDVYHFQLAPVPRLPPLMLKVVFCPLQIVVVPVIEVAGTDVS
Ga0335053_0049967_2624_2854F058592N/AMVLLQVPSALTKYVVVAVGDTVMLAPVPADVPPHDDVYHFQLAPVPRLPPLTDSVVFLPRQIVLVPVIEDAGTEVS
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