Scaffold Ga0335053_0024635

Overview

Basic Information

• Taxon OID: 3300034118
• Scaffold ID: Ga0335053_0024635
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4354
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003961	Metagenome / Metatranscriptome	459	Y
F031031	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335053_0024635_1_237	F003961	AGGAG	MADNSADIAKRIILGCVAEGMTIEQACASAGKSIKTYEYYRRTDKVFTDKVDRTRLGLKDKSFASGDVHDLTFAEFRQK
Ga0335053_0024635_3440_3610	F003212	GAGG	MKDRYLVTLEIETYDGDPREWDWEKLSTGEDVIKIIETQWKGRVLPTSEGEGNENA
Ga0335053_0024635_3890_4141	F001477	GGA	MSNIYTIHPPKSDLILFYEVVTPEGENEWGGASAEQCMQWLTLAPNGSRVLVSAWDSDEEDAHLVGQTIDITEIIQRAREIGR
Ga0335053_0024635_4211_4354	F031031	GGAGG	MESKEVSGKQAIHYRNYRRARDRALVRLSHLYPNLYRDLLAEEKENDQ