NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335033_0064928

Scaffold Ga0335033_0064928


Overview

Basic Information
Taxon OID3300034117 Open in IMG/M
Scaffold IDGa0335033_0064928 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2184
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029090Metagenome / Metatranscriptome189N
F029723Metagenome / Metatranscriptome187N
F032529Metagenome / Metatranscriptome179N
F061798Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0335033_0064928_1289_1624F029723N/AMTSSDSSDDRQKVLMTPMQLSVYWRKVAAETLKLLNDIHLDEDHDSEDNLSAYKLFHEQLRELKRIDPVRPFNQITMGPTHPIVTSSCNCTLCDPSSEDIDSEDSTESVLI
Ga0335033_0064928_574_924F032529N/AMAESRRLIDVTDAERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGNSEEQIRRRALAWEKLYEIRQVPVKENTSSKETGVEGTSCEVTSSTDTTSKNEAKK
Ga0335033_0064928_9_590F029090N/AMKQKSKVATFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQERKQENHFRLIYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALRYQESALPDLGNLTENDFN
Ga0335033_0064928_940_1248F061798N/AMAEGRFIDLKSQDIKHIDEILLRYVSPNNRDSARRDLITRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNESENGNPSEGKTNS
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