Scaffold Ga0335068_0164899

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0164899
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1187
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F039641	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0164899_2_307	F039641	N/A	WRTVNQADGIGGVSQHWIQVAEIRGTISNTGDTEGVVGGMIEQSGTWTLTCSPDIEVKADDRIYTSGNPQNLAPYYEVIGSDYGHTNAVSQTIALRARTNG
Ga0335068_0164899_644_895	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTAEAHDLSELGAVLALYGSKAVAAGVSAALSSVLAFLTMPFKGTQVNSLKVGK
Ga0335068_0164899_892_1119	F006623	AGG	MNLQNYRLEPNPNVPGDWIAFGDITDNEGNLLGTFGPDGTSIFTWWVTQDVAFQQQYSNQFAVIMAQEIVTGTAE