Scaffold Ga0335068_0055702

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0055702
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2304
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F010837	Metagenome	298	Y
F037203	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0055702_1437_1637	F037203	AGG	MKNNFFPTLSEALESENLSHAWPCTPIAYGQTIGLTYDDGSKYGYYVSIYRDERGLYERPVHYKRG
Ga0335068_0055702_1959_2204	F010837	AGG	MGRPSNPATKYFQRTLTNPQRMILLAAGKGNLCRGFENVLDLYSHAHNEGFRPGMSLHILNIDRTTTNSPNLDEPLRDKVR
Ga0335068_0055702_480_650	F002707	AGG	MTQIDALTKCLVLAITAPTDEKATQASQLAEQIAQGLTKKQVNQCKKKALELLEEA