Scaffold Ga0335068_0046256

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0046256
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2565
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040539	Metagenome	161	Y
F044983	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0046256_2132_2317	F040539	AGGAGG	MKWIRKYVEAITADTYTYVGLLIAYFTLDGSAKKVTGLLIIIGVVVWLATLPLRDDDTPK
Ga0335068_0046256_347_562	F044983	AGG	MSDEVWASIERKIKGHYLAAQNLPASCPQCAKILEPTDFGVDPDTNERMWVTHCCGNWEKFYEKLGPADLF