Scaffold Ga0335068_0038695

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0038695
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2843
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060610	Metagenome	132	Y
F100269	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0038695_1319_1969	F100269	N/A	MASVRTETIYLIAIIVLVFLLLKSCGENVSNDYRLKHTIYEDSVLIASQKKIIAQSGSDAAKQAQQIAELEVKVKNASELVKIETRTVIKTQIKLGDTVMVNNYPMIRTGKPFLKTTEWYTIGGMINRLGWLQIDSLVIPAKFTYAVGDTMRTGFVNKLLKKSDKVVRMRVDNPNVEITGMQNIYIKEKKKWHQSTAFKLGVGMLIGVAVTSVGNK
Ga0335068_0038695_138_614	F060610	AGCAG	MDEGRDSTYTTIDEGCVVGIGCKVHTHHHTIHIEPQIVYQSMEKFTIFGKHYCTNQWGQTFEIAADEPMPLRHTMTKVYASDTITPTQSAFLVKPKAEQKIIIKPRTEFREYQPTMDGPVMGMLLTFTIYLTAQWAWSSMDAWSNLCSELKQCLRYSS