Scaffold Ga0335068_0031452

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0031452
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3201
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0031452_1192_1674	F031872	AGGA	MVESLVVDEWIFDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQTDTTSICGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVDRIDTLLNRQTVNSTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVATITPEV
Ga0335068_0031452_2131_2508	F033435	GGAG	LSNSIFDTIPKLEGRPNYSVDIERFIGAPGAFVFREPKAADLFPRPEVEKMLKIGFPEFPAQMLQILMIMARCYVTQAGDGEINPARRFAQLARDRSDIYLYVVGQFAAAFPIDIEQAVDEVPND