NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0016630

Scaffold Ga0335068_0016630


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0016630 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4572
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033000Metagenome178Y
F061792Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0016630_17_583F033000N/AMEITSKLCKACRPKRKPTSKLTKKDLHNKVQTGDLNAYLAQNLLIVRQRDAHNKQAIASRKRWLKVWKVELRTALAPITREIVSAKRAYEYARNKGYGGKDKFYFEYHAILKHEKAHIELSHATNPRRPQSARWADYLGDNVFTIVREMWARLPPIYKAGKIPLLIKYRPDGAQLADNLSATTQGERR
Ga0335068_0016630_3724_4572F061792N/AVAHHRLIEGSNEYGKYFDVKLYQTVMARFYEPKVEDGKRVERRLYMGHSSQTSKQFMYYTLRVDVGANRQRDSDDMYSDESIIMPIYTEHFMHDEGVPFSLDAYYVDGVLDPTRSRHTPHYRLVADTDVRKFKQRVATHFEPYIMLAQMRMPEFKASCDINYRLGQKFGGEGYNRAYYMAIQEMWTDPEPRQQDIDVFFEMCQKAYDIIASKRGMQQSDFQVGGSWYSRQNGNKNSTVDELAKPIEMVEFRRAILDRIHKYVGSNSMKKPEEVKQFPKHSEYP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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