NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0016033

Scaffold Ga0335068_0016033


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0016033 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4668
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061800Metagenome / Metatranscriptome131N
F102820Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0016033_1407_1919F102820GGAVLKSIAIEDHGQKLRIAEKSVLQLSITPLHDAPCVLEDEAFLVSFKNCKGNTVSNFNLLPASKAELIQLALFLGTCTYFHTTVTHEIVTGQHIVSVPTFDGKVEVTLSTDSDLVELLDDPGIVQSLTLILNIDQLEAYEEFITSSIATNEAIHSDNSNALEASKQLQLAS
Ga0335068_0016033_3294_3692F061800GAGGMHSDNQAQSFARDLLKPGFPFSIRDKNNKRMKIHRKINENQCVNLMPTLERAYNLCLEGKAEKAARLVSEITGLLVAAEIDLGPEYLVEVEVRNAMPRMLSQIRRELKKNTPNFIEEDLQESENSGNDSHKG
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