NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0015235

Scaffold Ga0335068_0015235


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0015235 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4803
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049561Metagenome / Metatranscriptome146N
F096905Metagenome / Metatranscriptome104N
F098924Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0015235_1051_1479F049561AGGAGGMTKIKVELEETDLFNAIKKILDHPNRVEIAKVLTSIIAPHEKVSSIFFKTYFGGSAPQVLPEGTMVTVNPNRLSYKTNVEGMKRLGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDESYEDTGFINYQDVITVIEDL
Ga0335068_0015235_530_850F098924N/AMNVLGKLFNKKKTYPKDNNFEVLIIGEDKSDFQEMLGITDVRKEELVKLALISYKNEDLFTSSCKAVVAECTHINEVVFVMTVLTKIREVECNPFAALLGKLSDGE
Ga0335068_0015235_840_1058F096905N/AMESKVFTSVIGFNFELNLVDNDGHPVKVGAKRIEYLSSDVPNVGTKIGGESWFTNFNEPLLSKIRDYRRRND

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