Scaffold Ga0335068_0015235

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0015235
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4803
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0015235_1051_1479	F049561	AGGAGG	MTKIKVELEETDLFNAIKKILDHPNRVEIAKVLTSIIAPHEKVSSIFFKTYFGGSAPQVLPEGTMVTVNPNRLSYKTNVEGMKRLGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDESYEDTGFINYQDVITVIEDL
Ga0335068_0015235_530_850	F098924	N/A	MNVLGKLFNKKKTYPKDNNFEVLIIGEDKSDFQEMLGITDVRKEELVKLALISYKNEDLFTSSCKAVVAECTHINEVVFVMTVLTKIREVECNPFAALLGKLSDGE
Ga0335068_0015235_840_1058	F096905	N/A	MESKVFTSVIGFNFELNLVDNDGHPVKVGAKRIEYLSSDVPNVGTKIGGESWFTNFNEPLLSKIRDYRRRND