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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034116 Open in IMG/M |
| Scaffold ID | Ga0335068_0011912 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5483 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007799 | Metagenome | 344 | N |
| F016529 | Metagenome | 246 | Y |
| F044361 | Metagenome | 154 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335068_0011912_3297_3962 | F007799 | AGGCGG | VSFLDNYEDVAARIQRFWATHKDGKIHTSIMDINLEKGYVLVECRVYRHYDDQEPAGIDYAFGNVNTYNVQMKKWFVEDTVTSAIGRCVGLVLGADKRPTVQNMQQVERIDPKIVQDSAVAYDYWNTKHGDVPSFKTREEAEEAGIPTLGVAIDTIKETLGGVQVAAAPLCSHGHMIWREGTSAKTSKGWGGYMCSEKVKAKQCPPAWYMLGSDGQWRPQV |
| Ga0335068_0011912_4696_4872 | F016529 | AGGAG | MPLLRFDCSICKKLYGDGRKEHLITKGAELTMHEWFAQCSGCGAFSVKLVDDSLVKDL |
| Ga0335068_0011912_9_1004 | F044361 | N/A | VDVAVTVSQTGSVAITQEVTITALGALSRLQKALTLGVLSKDFDGDQIYTILEDLLVNNWSEVPAALTWANYTPATTTWATAENTGLGEIDRPGNYELANRGSSQIITWNLVADLATSGLGYLYEDASGLISYADSTHRSTYLATYGYTDLDANQALGRGIKIQTKAGDIRNDVSIVWKSGTKTATDAASIALYGKLAQQITTSLEHATDAEDQANFYLTLRAQPQAFLESITFALTNPEVDDADRDALINVFMGQPISLSNLPVNMQSGNFLGFVEGWRFQASFNELSITLIVSPLPFSLQAMEWQDVSVVETFNTLSPTLDYADALVVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |