Scaffold Ga0335068_0008077

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335068_0008077

Scaffold Ga0335068_0008077

Overview

Basic Information
Taxon OID	3300034116 Open in IMG/M
Scaffold ID	Ga0335068_0008077 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6784
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044464	Metagenome	154	Y
F098948	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0008077_1_222	F044464	AGGA	MAAYLVDFTTAYSPAPAFYSGTGATTLVPNVFPVAINGRPYLIDLKAGSFQRQYDARVRDSVDQSAEPGESAIN
Ga0335068_0008077_3058_3360	F098948	N/A	MGRSLKHRETHPGLDVEGCFGCRIAHFNVSAEAMPTRKPESKRIIEKERVLDKDLDAYHRLRLDGQQPKHIDGAAIVEKRAEENWQVATGILPDKTNIVG

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