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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034116 Open in IMG/M |
| Scaffold ID | Ga0335068_0001931 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14696 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (19.51%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031482 | Metagenome / Metatranscriptome | 182 | Y |
| F048306 | Metagenome | 148 | N |
| F073545 | Metagenome | 120 | Y |
| F079619 | Metagenome | 115 | N |
| F085693 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335068_0001931_12674_13600 | F085693 | N/A | MNTLQTTLTALQSQLESQKEASKYYYENVFSKEVATLEASIVEWFKEHTSETYKINVQSGGEQLKIYAPIQENPENIWRHNAVTIDHYSRYKEEAKARLSYYSTDCEYDNAPVVSYLVTVGKVAQLLSQINDIMPTWKAEYQQYAQKRYATFEQPISHTEFAIRKTEAQILEEGLASYKQAGFKHTISSSTLCERHYNIPYDEKGAYELNIKPQYFDLQTGRSKYDHVRVYAFEVVGHVKNGKVEMNIKTTAVEDGSFSPIVVTKARFDDFIAIVYNWENFDSIKYNEKQTQRYLDHMSKFTTVVEVA |
| Ga0335068_0001931_2692_2892 | F073545 | N/A | MLTPQAKAVELYNMYFDLGRDFTRGVSMKQFAKECALICCNQVLSDMGADRGHQYWTAVKAEIEKL |
| Ga0335068_0001931_3819_4148 | F031482 | GGA | VVELNWTKDLNFPNVGNSSIFDYNKLIKVMRNRYEKSPLSLIDGGSRIKITFKNGIEREYDNIKDVSAYVAKVLSESDYMIDRIDMEKEVVTKEWKPLFGRRRFTQDLI |
| Ga0335068_0001931_4126_4503 | F079619 | N/A | MEEINIQEWDNLQPDPISDKTKIELALIDLYNRLAMQVPTNHQEILDELAEKLLSQEASLTVKQVAGSLDASVSETKLRVEANSPYNDGWTKEFYEKELQKVTEKRDQDYMYNWIREKSGRVKLD |
| Ga0335068_0001931_7406_7624 | F048306 | N/A | MTKEEAEFINKLCENSSTTWIKLHIEYQNKFVDPSMWYQSSSGYQKDLPLPHGNQVEGSELCKEAQNIINKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |