NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0001643

Scaffold Ga0335068_0001643


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0001643 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16100
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F033405Metagenome177Y
F043777Metagenome155Y
F049426Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0001643_2532_2786F033405GGAGMINKKTDEQLIEAVNQYMEKYPNATRNHIVLHATGSATRVRELAKQGLIKLPKALPKGANTNWNGYFKNTSETNSSRKGMKYSV
Ga0335068_0001643_3278_3487F006587GGAGGMDSNKYEGTGYIIVGLIVGCCITWGIMKYNNTQTKYKTGLKCIQGELYEEVRTNMFVKSHLECFEQRSF
Ga0335068_0001643_6581_6760F049426AGGAGMKTKSIFRTPNSTSYKNYEREVYMSEYVTIPKARLRRLIITEVVAWGISAFILLVSLIR
Ga0335068_0001643_8477_8710F043777GGAMKLINGTEMIDNSPNEKAGELAEAIYDDVLFILDIEHKCIVDDEDGNTTNTEYGQDLFNGIYEQCMAYFERESHEKV

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