Basic Information | |
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Taxon OID | 3300034116 Open in IMG/M |
Scaffold ID | Ga0335068_0001643 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16100 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (84.62%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006587 | Metagenome | 369 | Y |
F033405 | Metagenome | 177 | Y |
F043777 | Metagenome | 155 | Y |
F049426 | Metagenome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335068_0001643_2532_2786 | F033405 | GGAG | MINKKTDEQLIEAVNQYMEKYPNATRNHIVLHATGSATRVRELAKQGLIKLPKALPKGANTNWNGYFKNTSETNSSRKGMKYSV |
Ga0335068_0001643_3278_3487 | F006587 | GGAGG | MDSNKYEGTGYIIVGLIVGCCITWGIMKYNNTQTKYKTGLKCIQGELYEEVRTNMFVKSHLECFEQRSF |
Ga0335068_0001643_6581_6760 | F049426 | AGGAG | MKTKSIFRTPNSTSYKNYEREVYMSEYVTIPKARLRRLIITEVVAWGISAFILLVSLIR |
Ga0335068_0001643_8477_8710 | F043777 | GGA | MKLINGTEMIDNSPNEKAGELAEAIYDDVLFILDIEHKCIVDDEDGNTTNTEYGQDLFNGIYEQCMAYFERESHEKV |
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