Scaffold Ga0335068_0001643

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0001643
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16100
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F033405	Metagenome	177	Y
F043777	Metagenome	155	Y
F049426	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0001643_2532_2786	F033405	GGAG	MINKKTDEQLIEAVNQYMEKYPNATRNHIVLHATGSATRVRELAKQGLIKLPKALPKGANTNWNGYFKNTSETNSSRKGMKYSV
Ga0335068_0001643_3278_3487	F006587	GGAGG	MDSNKYEGTGYIIVGLIVGCCITWGIMKYNNTQTKYKTGLKCIQGELYEEVRTNMFVKSHLECFEQRSF
Ga0335068_0001643_6581_6760	F049426	AGGAG	MKTKSIFRTPNSTSYKNYEREVYMSEYVTIPKARLRRLIITEVVAWGISAFILLVSLIR
Ga0335068_0001643_8477_8710	F043777	GGA	MKLINGTEMIDNSPNEKAGELAEAIYDDVLFILDIEHKCIVDDEDGNTTNTEYGQDLFNGIYEQCMAYFERESHEKV