Scaffold Ga0335068_0000690

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0000690
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26203
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (74.63%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004132	Metagenome / Metatranscriptome	451	Y
F007112	Metagenome	357	Y
F011077	Metagenome / Metatranscriptome	295	Y
F034566	Metagenome	174	Y
F070856	Metagenome / Metatranscriptome	122	N
F097334	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0000690_1356_1514	F011077	GGAGG	MHESMDTNLTWDDGDIWKGWTYSIENNRYYFDDIGDESLDTLWNSEFLMRGN
Ga0335068_0000690_17603_18193	F097334	AGG	MPDVLLDNDDITVLGPPEVVELLVDIGPTGTRGSQVFVGAGNPNTEGVGQTPLLNDLYINTSPGTDYGYLYQYVSQPGANTWIEVLELNPTIYSVNHTTTYTNGIAQIVIPISNITSLTSLTSSNFSVQFSIVNDNPIAASMSIPALAGNNQNLVINFKAVEHRTDVDSGPYGDWAVLEGQVTTHLFITILEDEES
Ga0335068_0000690_24746_25192	F070856	N/A	MATYRNPDESSITNVTTPSVYNLGNKPPLINWTAVIGDTISFRIYVEDDLGNPLDYTNDESGDITGWDIKGDFRRYSDDVGDDLLFTVYPYATEFDDPGEFTVTVSAVQSKQLRTGDVFDIQLTDNDRIWTVCQGEMIMLGEVTDQDS
Ga0335068_0000690_5304_5861	F007112	AGGA	MHTLHYIAVEADNKQEAFDKVVVSLQTNEDGYRIGDWSDWHVVGGGRWSTNAQKSKDFMDGYNHDSTDVIGYAKNKEKFQEVIKDILRFRSQSMNRNIVEIKTDKFISQMVDYASEGGRGPWNGDTLMNVYSIKQAAEMLMGSWTCDSGFYDLEEHVSEFEYLNERLDKPDRAVRQYLVPVDFHF
Ga0335068_0000690_594_920	F034566	GAG	MKTLVWVQIFLIVILSTALLFLGGDLKHSRKMSLDQSNYCIRYTSDIIASSRLDLIREQDAHSRTVDNANSVIDDIVNRYNSLAARYNKSTGGTNYDPLNTYSYRIRP
Ga0335068_0000690_8137_8658	F004132	N/A	LHFHNLDDIIVLTEKEPLMSEVMTQEQLSVPYNPNLLVTYKYVPETYAAPESPTFMTDKVTQIEWDLHNGRTTQKQLAERRLDISWLEEQIVEWYDPNYTKEEVLQAIIEHFGFNPTKQIEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLSSYEYDADLNVDEVSLEDHY