Scaffold Ga0335068_0000606

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0000606
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28159
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046242	Metagenome / Metatranscriptome	151	Y
F046259	Metagenome	151	Y
F093505	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0000606_11104_11289	F093505	AGGAG	MKNGMRKIAREEVQKHENVMHKGVKKMRAGGKTNSEMKKYGRNMAKVMNQRSPVRKSSGP
Ga0335068_0000606_12124_12372	F046259	AGGA	MSFVGGSEIGSVFVQTTDHRGHTVEEIAERAANRILSADSKEALHYWLVKYLSEAQAAERQMICKKLDQQGYAEIAHLIGDL
Ga0335068_0000606_6826_7059	F046242	GAGG	MARTTFSGPVKSDNGFEGPIAGDSAVITNLACTTLTIGSTKLTTGSVSGTVSVQAGRIPVLIGSTTLYIGLYASLVP