Scaffold Ga0335068_0000570

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0000570
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29007
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F002391	Metagenome / Metatranscriptome	564	Y
F003818	Metagenome / Metatranscriptome	467	Y
F022635	Metagenome	213	Y
F028780	Metagenome / Metatranscriptome	190	N
F030696	Metagenome	184	Y
F040591	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0000570_15444_15977	F028780	AGGA	MKATLDRYISTHYEELHRYTRYFCSKYNPHLTIDTVISNAYLHCIEINDNTEDVGKVKSYILNSIKRQVIWKNVDTYKDERILASEISVPDTFDDGEDLSYKIAIEQQYQGWKSSVDIYRDGLTDNVKIAVAKAYFDKGLTTARSMAEYFNIPVTSAHYLIADIKNTLKTIHYENKR
Ga0335068_0000570_15961_16251	F040591	N/A	MRIKDEYKGKTIIKKTTLGNMTVVVDNIDVSRYRHYVSIGFGYLFEQENVSTTAPEVCIRYEGIEADEQTEAPAAEPKPKRKRKTNAKANTKRNQG
Ga0335068_0000570_18394_18666	F002391	N/A	MGTNLMGELVADMGTYIANNTTEVTKTIDAIVVLQDTVFTSIKVAGTDVKSTYIAATGTAVKAGAIITPINNLQFSGVQLASGSVALVLG
Ga0335068_0000570_19445_19642	F003818	N/A	MIVLHPNEEQYKALNGYTNGVHKLIFAIDGSGKYIVGLEVLNDPNFSEIREQLLELEKITYTPTE
Ga0335068_0000570_25676_26125	F002018	N/A	MISYQALVNEIIAFYNAHLQVKKVGSDFKEQLFNFATKDEKYPIVYIVPVDAIPTENTNDFTLEIYCFDIIQKDRANINTILSDCHQILMDLYLNYTFNDNDRDFDVVGFPALVPLNNDLLDYAAGWLMTITFTMDSWTDCQIPKQIGD
Ga0335068_0000570_26197_26565	F022635	AGAAGG	MANTLKKVIKDEALIDTYTLYDSVRINAKVSTEGNIRVEILAAYYFGYLNNGTATIAPFHLVKKFNQAMEMNGLIAEMYGMYVADLAQKFPILELGNLLRKRPKVIYDFVPLFGEFNYSLDY
Ga0335068_0000570_4875_5297	F030696	N/A	MNFKVTILSLIVTIFATSCGLNYHLNKAIKKGYRCDSVADTIRITSVDSFPVIVDNKIVYEYYHTTKDTIVRYKTSFVPLTRYQERIRYKLKRDTIHQVQKIEVAKYKSQKEKPAFWVLILGFVVGMGTMYLFRYSKKEI