Scaffold Ga0335068_0000552

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0000552
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29550
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (19.05%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F014972	Metagenome / Metatranscriptome	258	Y
F034186	Metagenome	175	N
F035312	Metagenome	172	Y
F036698	Metagenome	169	Y
F080976	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0000552_14344_14793	F001883	N/A	MAYAKNGEFNVLYPTRRRMANILKRILRNDIVDGQGTLVESIRINAKITSFEKLEIQIVAMYYFIFLNNGAFLWNGGVITPRDYVNQFTNELNNSGITAEIYSQYTEWLTKRYPMLKVAEILEKNQRITYTFEALDPPEGFKVGYPLDV
Ga0335068_0000552_14793_15026	F014972	AGGA	MTYKFTQFNVGIENPTITINLNTISDKAIDQLLAVDVLLTTDTASFGVRAEDMPYVGTWEDEEVEGMVNNWLKQFEI
Ga0335068_0000552_26815_27354	F034186	AGGA	MKRMLDQYLQKNYTEVLKYTKHFIQRLKIPSSVEADAVINNAYLHCAKLEIEEATEDKAKSYLLNTIKYELIWTQGSRTKKDDIYRSHEYLGDSLDDPSDIEHKVNLEDSYNFKKAMVEIYRNSLDDRIKKIIFEAYYDKGHSTQTALAKYFDINSTSAFFLIKEIKQNIKEIQYRYKD
Ga0335068_0000552_5895_6068	F036698	GAG	MTATHRIWLEDSVEELGGFWWYCYLDHNGCLQDEKYPDELPETPQWYINNGYKVEAL
Ga0335068_0000552_6941_7216	F080976	N/A	MKEPKKKKDININIDTKNVDIKVTRKDGVTDVKVDTDKVDVDFHKDSDLKELKIDTEKVDVQVNNGEVNVDVNEQSGFVGKLIKFLLRRKK
Ga0335068_0000552_7992_8282	F035312	N/A	MEFNEIAFTIITVLLSAIGYFLKGVHSEIKAIVSEQKEIIADVSHLKGKIDLVDNEARFRSDSIEKMTQLEIKHLAEHISELTQSVKKLIEIQLVR