NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0000389

Scaffold Ga0335068_0000389


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0000389 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35235
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021983Metagenome / Metatranscriptome216Y
F031030Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0000389_17123_17461F021983N/AMSEWPTIGMGNLQAMMVMRQQSAPVSSINGFDPYQAMLRRRQSNADTDTGYNNDVVQQYDPKDIQELEEFCQRYGIMGFNFGKMNPKAALRMLKGKMGIIDEKVSNKKMLLD
Ga0335068_0000389_33316_33903F031030GAGGMGMFDDVVCKYPLPLPEDPKGYCNDKYQTKDFDNAMDLYEIREDGTLWLHCAEYEYTDGNPNAKSLIEKLPTRKEIKVWWQQIFPITNTIRLYAYDSDTNDKYDYWIEYDVTFVDGKVTGAKVIEFTATDNSERKEQHRKDVEYWTKRRNFEKTKFYILFGKPYNKTVKIICNKIHTLSYWLSYKIWELEKFLKI
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