Scaffold Ga0335068_0000353

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0000353
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37328
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (41.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F016125	Metagenome	249	N
F017799	Metagenome	238	N
F019100	Metagenome / Metatranscriptome	231	Y
F048176	Metagenome / Metatranscriptome	148	N
F082107	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0000353_11404_11814	F011740	N/A	VITATYDRAATFEASYDGARSDAGRLSAEIMERLVELHELRMTSAADLCRRLGTLADLSPTMFLVTLRLGSGDVSAVRQSFGEMAKNRGKTRQFFHWEWQQEIEKVRIVFPELAQLMTDYRQATDEADRPEREGRE
Ga0335068_0000353_11811_12128	F017799	GAGG	VIDSQRNPSKAMGQHMTTTQTHDQDQRELEALRFSARAARAITTLEMQRKTITREYGERIKKIRALILILQQRESIGQLGIQGIDAVEISPELRKLIHNPVGDLT
Ga0335068_0000353_17363_17659	F048176	AGGA	MNNDNEIKAEAIINAATEQFRSLLETNFRSIAKAAQDGFTDDEDQTEPKAKATFSVEWDALAMAPTVSVKVGWSVRFKDESETEIDPLQSKLGLEVQS
Ga0335068_0000353_18663_19067	F082107	AGG	MTTEQHLELLTELRAIRAALEKPKPMLSLTAATAPTATPDTLPLPAIAIADAGSVQVHFGKNAGVPLSALSDKQLLWYGADRPEQLKKDGTPFAPREADVLLKNACRTLWHQRKSGAPIVPATQPADDGENVPF
Ga0335068_0000353_29899_30219	F016125	N/A	MAAVRDFDPTQINSDFSAILEQAGISFTYQGAAVTGIWSAASNAFADFEDQRRDDSKFTIFLLTTSVSAVPQVTQTLSRAGITYYVERVTLDAEGAGCELSVAKVI
Ga0335068_0000353_9435_10064	F019100	N/A	MSDAAQSPSEILARRNVQNIAVKLKAGKTLTTSERKALNEFQAEQTGGWVKDLSALAKELGMSRQGIYDVRNRFADAPKKHEDGKRENLTAWQAFCAEHLIGKDTATKNLADLKAELMREQIRLARSKNEREAGDVIDREVVEAMLVTLGQKLDLLLRLKLTIELGPRGVGMNAAELNVEGGAILSEIREVVNANIATFEAEALDRSRE