Scaffold Ga0335068

Basic Information
Taxon OID	3300034116 Open in IMG/M
Scaffold ID	Ga0335068_0000351 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034116 Open in IMG/M

Scaffold ID

Ga0335068_0000351 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37575
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (76.36%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

37575

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (76.36%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F012451	Metagenome / Metatranscriptome	280	Y
F012663	Metagenome / Metatranscriptome	278	Y
F035228	Metagenome / Metatranscriptome	172	Y
F040602	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0000351_14466_14672	F001396	GGA	MFSSVWVPIIVAIIMGPVVVVLQKLRKENTDQHAEARILLRTIGGKVDKVASKLDQHIGWHDGKKDSE
Ga0335068_0000351_14679_14900	F012663	N/A	MELLCDTCQKLFFSEQMPHRGSICFKCHIKGVRLGFTYGQEDFHGPTIRERQRQTVEQAKINGYNAEPVTNWM
Ga0335068_0000351_21146_21454	F040602	AGG	MATTNDAMYISLKAMYPTAGDTLGDLLYAHWSAEGLGFRGSLQFDYYVAQESVSEATGTTWGDLANSFWSDPDFVVSNLENESGNDLLLEDGSFVLLEVGNG
Ga0335068_0000351_33608_34123	F035228	GGA	MAGRQASETNNSNKRVNQSDYDIAPKQYDFHTDLRYGKQGEKLVEEFLETLSGGAFEVKTDRYRNGRMVLEMEHNPRRKVDEEGKALWKPSGLAVTKARWWVYVYTLDGSFIIVDVQRIKRYLKVNKDRFNPKKYHDFAHRSSNPSKGYLLQPEDVMDMMINPAYDTVPKL
Ga0335068_0000351_6751_7467	F012451	GAGG	MAYAQMTAAALRQTVRDITDLDAEDLPDSLVNLYLRDGYYRILDLQKRWAFLEKTFTFNTVAEQRAYTISAFTADPIGQVVSIVDNNNVGYRLDMVGHDMAEQTYIGSYDTSGDPLFYSIWEGKVHLFPKPNNVRTLVVRAYREPIDWITTEGNVDASPNLHFALVYYACSRVYQRLEDTLMSGEYKRAFDEAVTLAATNINKPNSHAHLRLSAGQTSGRPTFNGWMQTMGKNLKENQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335068_0000351

Overview

Ecosystem & Geography

Associated Families

Sequences