NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0000312

Scaffold Ga0335068_0000312


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0000312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39764
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (75.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F013753Metagenome / Metatranscriptome268Y
F026484Metagenome / Metatranscriptome197Y
F058086Metagenome135N
F066605Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0000312_17530_17967F013753N/AMKQNEELTLSAPQQRYLDWLCTAPSERVPASKAKYAVEHVVDISTLRRWEKKEVFRSQWKQQVDEFQGSPERTQRLLDNLYNKALEGDTKSAELYLKATNRMAPPSVTISSNKKATELTDAELDSLIAAVAEREKASRSQLKVVV
Ga0335068_0000312_18085_18402F026484GGAGGMTTTNDAMFEALSVSYPDSGQTLGDLLYAFWSEKGLQYRGTLEYQFYVDEGATGTTLGDLANSYFVDIFPIQFDIENFDYDDFEEWLELQVFNRYDTVEQDIFTI
Ga0335068_0000312_24081_24308F066605N/AMKEFRCLECLSTFIDAELPRRGSICFKCHIRSINLGFTYGKEDFHGPTVRERAKEQERLAAEAGIKAEPVGSRWV
Ga0335068_0000312_24310_24510F001396AGCAGGMDAVWVPIIVAVITGPVVVVLQKLRKENTEQHAEGRDLLKLVGIKVDKIGSKLDQHIGWHEGKKED
Ga0335068_0000312_5711_6151F058086GGAMKDNRWDIPASQQYNFKNDLAFGKKGEQITKDFLTAIATGSFEVKTDRYRNGRMVVETEQNPRNSGWKPSGLQVTLAEWWVYVYALDGSIVVIKVDRLKRYIATLPEKRTKTFAPMSNNPAKGFLLLPEEVMDLMTNPIYDKASGE
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