NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0000086

Scaffold Ga0335068_0000086


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0000086 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82403
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024037Metagenome / Metatranscriptome207Y
F028727Metagenome / Metatranscriptome190Y
F102624Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0000086_2275_3222F102624N/AMKYITNTYDYKNEWFNALLSLTFTPFYSCFFIQKFSWNNIKEYISPERRHILIFPICTGILYTVETVFVFFALNTVTLSYYTILRSGFIIFNIPWFKYLLKKPVSKLYFASCVSLVISQVLATAQYIFQYQAQDDKRAQNVVQNTVIIMFSCFLNSAYNNMIEYTMIHYSESITNIDFQIIFQSTYFVITAPCAIYFTVKNAPPINPSSITMYFFIAFGLQLYMFNKIYILNSRNRLIPANILLSGLDLLRRVLQLTYSFVWFKEPFDATIGVSLFFLGLSGSILLYQYISDYRKNNVLEHQNLESPDDIELAIR
Ga0335068_0000086_74254_74445F028727N/AMEALIHFNIGKNGEHKQHEYIRVSDQIKIHIPDKNEFFQICKTVLFFSCLTGLLSSYIIKHLL
Ga0335068_0000086_74526_74843F024037N/AMRPLRRVDPTNLQPGKMYLIREKRPEFAHLNSKGVFVKNDYPRSSHYCTISHFTNVQIRNNAHYIDLRLQDVYWNYYEADAVERAYTTQALRIITGDPDFIFDYS
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