NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0000004

Scaffold Ga0335068_0000004


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0000004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)221695
Total Scaffold Genes204 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029103Metagenome189Y
F030429Metagenome185Y
F048777Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0000004_117974_118870F048777N/AMKISLPEVVLPNKSIIYLVLAVIVGLGIYHFTYLKSPYARPIGSSQGFKDTVVLDTSIRGIAPYTTERINSLDQYELEAVFDNEGDKQLRQNQINEMTRRYPLDWSKYPPNASKFQSGQAKYIEAFSANASAENMEEPYKNIGAGNLTPPDTLEMDKREREILQTYTPKKANSLTTYEIEDAQSLIEKIYKPKGIIPTLERKEGNVFEVVSTRQINGKIEYEDDLPMATSSSRPNTAAGEAVINVPPVATETAAGLDPFYEPTTATRSDRADYTRWTPGLERMFAPTYPITDWIGQPN
Ga0335068_0000004_164868_165131F029103N/AMGLLNKMVSAIVEGYTNPGGTEAYKPPPAYSEALAAILALIISLIIVAFVGLWLWNYSVVPLFEFARPAKSIFQILGLMVFVALIHT
Ga0335068_0000004_89267_90082F030429N/AMGIVWRCQDYSLSKEAVHARLKLIAIQRGVFLNINRRQWHLDSKVSDEQAQSEELRKDGLPYETSLIHNGFSVARMSLQDRHYIRSIVESLGENAHVLRGERILVLYEADLLSTESVLLLQRLLEMHSESGNITIWCTVRESIPFKLRDWFLDIPIPLKFTPVHPWIPVIWDWIERTRGLKEPSLNHIEALRNTIYAILQRNIRWFDIHQIFLELILEHHSEFGPDLTEKLLECLANSPNTATGHTLTSYRIPIAWETLFVSMYNILVGTK
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