Scaffold Ga0335068_0000002

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0000002
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 280209
• Total Scaffold Genes: 295
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (26.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032929	Metagenome / Metatranscriptome	178	Y
F037579	Metagenome / Metatranscriptome	167	Y
F074560	Metagenome	119	Y
F093844	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0000002_178671_179141	F074560	N/A	MTRRTVDFYTYEKGKNQRTPYIRSQEPIEYVCDGKEGHIHFNGYYYVENHAPPYPEDEGLERWGRPRRYGEWLPQKVIMFTQLLESEPYKVELLDNATTSYYKDLESHQYIIEIYNRVIHENTDVISQIDDGGELMDVCFFPTNRQTIYFRVLGDF
Ga0335068_0000002_226777_227376	F037579	N/A	MANAGTLLSDLDSKAPIAGDGDLVKMIYQDMNSGNEMRPGAAMGGIQSGPMNPMPPPQSTQQYQMDSVPATAHIIGGQHPTSGDFAQMLQSSAPGFPAGGNWSTGPSPQAQIAAQIASMQAMQGKGWGTYLSDEVKTPVLIAILAFVVNLPFLSVLVAHYAPWMLKASGDMNLYGQLSKALLVGLLFWTANRVILPLVG
Ga0335068_0000002_254254_254925	F093844	N/A	MRYVSRFHNGAKKGDDKILNTVIMNKLNIFSVKTYDDVKQFLFQILGSDQREFVREFTWLVFRRAAAEEKFCALFAKLLSEIKKEYPVILEEMLALHTKYLDIWKIRDTPDINIDKRCRLGYSQFLAELTALEVLDSNTMKSTIEMLKTCIVECLSDAAFKETIEEYMDCLKQLCSSKVPKLVRKTIKELLVSDLDLWIKEDAPGLSSKSRFACMDLRDLLLK
Ga0335068_0000002_72840_73802	F032929	N/A	MKDLIMPLTIGLIAVVAIGIGASISQGMVSNNPFEAKDLFNRGMNLPAIWIFYDTSIPNARLSADFSSRSSRALALPFLNLCYESIAKQNSSQYRIESISGLAGLAEKLGGWDQLPNKLQNPLVSLEPADFAWIRASILNKYGGLWVSPATICLKPFGSLPNKPVFFGTDPDESFSGTAGTKVPNFQVAWSPVPNHPFWAGWEAKSKKRLDTSGGGDTARGDHKWEYIALANMNPDIEVRPMAEVSRKGASGKRIQIEDLLAAGQEGVTPFEIGPLGIYVPLPWPELRDRRAFGWFLKMSESQIAESDLVISDLFHKAGV