Scaffold Ga0335066_0375686

Overview

Basic Information

• Taxon OID: 3300034112
• Scaffold ID: Ga0335066_0375686
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 782
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007919	Metagenome / Metatranscriptome	342	Y
F036765	Metagenome / Metatranscriptome	169	Y
F047649	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335066_0375686_109_294	F007919	GGGGG	MTAKLKFTQVSRVICPKTGVHYLDAIDENGIHWVAQQEIGVERWITYKEVWKRDPQQPLD
Ga0335066_0375686_291_617	F036765	GGA	MTIKTTELLKLFAKAQKLQLSVEVREDKDSDYVIRIYEMFRQEGFDEKVIIDQNGGSSWNKGSYSFDAMMDVLDGMLEEKLLEEIKARKRQELIARLTDEEKELLGVK
Ga0335066_0375686_614_781	F047649	N/A	RTYEHQCDFDAKNRAEKASQDYYNKWINLRKEVRNLVREQNLTITPEFSKLIGLK