Scaffold Ga0335066_0051918

Overview

Basic Information

• Taxon OID: 3300034112
• Scaffold ID: Ga0335066_0051918
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2727
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F044911	Metagenome	153	Y
F095361	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335066_0051918_1888_2136	F044911	N/A	LGKEQKQMTPAELLHKDAARYATNRKIAYVEAVNRGAVDHMSEDALNGRWLAHYEGYREGYWVATGDSKFSTDPAKLKEKNT
Ga0335066_0051918_2133_2294	F095361	AGGAG	MNFNQGKLVDGFIEDVMKTIHKYDDTLYMATVIGALEFVKLQLIEESKEDDDE
Ga0335066_0051918_519_779	F028744	N/A	MHEFLYECDELGLALKCFFEYEPAEVGSVEPLSGLKLEPDYPEVWTLISVFLPNSNVDLSGVLHPDVIFRIEQDAPIYFEEMRNVV