Scaffold Ga0335066_0029880

Overview

Basic Information

• Taxon OID: 3300034112
• Scaffold ID: Ga0335066_0029880
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3770
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F031031	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335066_0029880_1_222	F031031	GGAGG	MESKEVSGKQAIHYRNYRRARDRALVRLSHLYPNVYRDLLAEEKDNDQTEGKKWVANNTRVSVTMGVRSRPTRS
Ga0335066_0029880_292_543	F001477	AGGA	MSNIYTIHPPKSDLILFYEVVTPEGENEWGGADAEQCMQWLSLAPTGSRVLVSAWDSDEEDAHLVGQTIDITEIIQQAREIGR