NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335066_0001510

Scaffold Ga0335066_0001510


Overview

Basic Information
Taxon OID3300034112 Open in IMG/M
Scaffold IDGa0335066_0001510 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16760
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (94.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018127Metagenome / Metatranscriptome236Y
F029017Metagenome / Metatranscriptome189Y
F031754Metagenome / Metatranscriptome181Y
F074372Metagenome119Y
F076850Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0335066_0001510_11339_11506F076850AGGMNPYQPPDDESQLDRIERKLDRLNGEFALTLMTGAIIATACLFALEVMRVNGFKF
Ga0335066_0001510_2256_2498F029017GGAMNELGLLTWYIVQLVLWAGPFGVGAFLAGCFFSGYFLGLKVSRLKRSNPMGAQKLDHIKYDILTDGTLGPGDNRGLEDSE
Ga0335066_0001510_2599_2973F018127GGAGMAKQKDNWIPWVIIGGLAFYVFSQQPKEGGDPKPAGVTAVVRSTIPSIRAAYKQAFLDAAAKIETGEIANQEQWTKFIEENAGAKRIEAMNKVYTAIDELKLPVTFAGREAEIARINKEIAGAW
Ga0335066_0001510_5273_5425F074372AGGMNDDEKIRKLQDKVYWLELRVKILQERNKELRQWITKLTNKNHPARRAGK
Ga0335066_0001510_856_1290F031754GAGGMNEKGGPVIMVVLLLGLFWFCSEPAKDPTQCDLMDSTPLIEEVATVKESFTVQPTDPQPSPSDKHEATKREILVFLAPKDQKCEPCDRWKRCEMQRFMDAKWEVAIFDEPHSYGRTPTFELKSGDKKATLTGYTTLEQAAEAVR
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