Scaffold Ga0335066

Basic Information
Taxon OID	3300034112 Open in IMG/M
Scaffold ID	Ga0335066_0000784 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034112 Open in IMG/M

Scaffold ID

Ga0335066_0000784 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23162
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (89.19%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

23162

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (89.19%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032962	Metagenome / Metatranscriptome	178	Y
F032998	Metagenome	178	N
F039471	Metagenome	163	Y
F056345	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335066_0000784_11750_12061	F056345	AGGA	MNFKLNRQRGITVAGEWIDLNQCQIRVGETLVGYLIFGEQTQILPLLHFPHDALTDAELANMASELEAIQGYPAKVQRPEQLSREFARLALEEIAQAKEEDDE
Ga0335066_0000784_12070_12498	F032962	AGGAG	MAALTVADTGLGATISGTGLITTQIKSIGEMTIGVDTLDISHLGVTGFELLRPSDLRKNPDVDISHNWLGAAPPLTTPMIPTSEPYAGIATVITLPGAGSFQGTAFVKEVKTPKLGKGEVMVGSYKLQFDGASGTQLTFTPA
Ga0335066_0000784_2262_2660	F039471	GAGG	MDEFYLLVTARRKQRKRTKAPNGRWLKQKPKDRTRITRVAKCTFDRGSFADDGSVVGRWYKIDIYESPFLGMPTLDDVFVGLSSDPGVRAAEALAERMVSGLGLASGVKWEANCGPIDAEDAALLRIELEAA
Ga0335066_0000784_8264_9136	F032998	AGG	MANELVGAELRKGSGFARKGQGFQLILGETWNYRVVTDQVTSNRQSILYDTPGLPRAGLLYGPLGLICDSVDCDREEKHALYWNVTARFQTGTEEQKQNSENNPDPATWIPIFKIDSFVTKEKVLAKDRSTPAKYPVNSAGTPFDQPLTDTSSFCQFSFVQFDDPGLKLKNFLDRNDIVNSTAFTALGQTFAARTLLLEVQEAELGSYAGYAAWRAKYKVTYDPDTHDEKRADIGPFYKSGGQTLRYMDSTNTFPMVGPLNGSGAKATDPAELSFRCKKEVEFSTIIRTS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335066_0000784

Overview

Ecosystem & Geography

Associated Families

Sequences