Scaffold Ga0335066_0000628

Overview

Basic Information

• Taxon OID: 3300034112
• Scaffold ID: Ga0335066_0000628
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25414
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (79.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025726	Metagenome / Metatranscriptome	200	N
F046251	Metagenome / Metatranscriptome	151	Y
F095166	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335066_0000628_14359_14586	F095166	N/A	MGELKMLLTNEEVLDIVDERLDLSDFNNWYGKSDDMVEFAYAIVKAEMQKRYELDLLRNTYFSESMDSFDELTIR
Ga0335066_0000628_8271_8561	F046251	N/A	MKELIVLKPLMMFYKKGKKMTTKKLTAPTPKFNVKVSPVESVFEVEVDGLPASFWGGECFKFSVSSDGSVTINDNEFSSKKQAAQALEAMAAFLKK
Ga0335066_0000628_973_1413	F025726	AGG	MSEPVTQAAKAAVSGIREALAVGKELEAVTKDIQDLGKSEIQARDAYRRKQKKRPSDTSVFSAVEEWRGVYEIKKLQDELKQDIIEKHGQAAWAEVEVIQQRILKDNKDLTDEFGRDIHKLAMLKWYCFITAFILVSFAYVMGYNP