Scaffold Ga0335063_0076207

Overview

Basic Information

• Taxon OID: 3300034111
• Scaffold ID: Ga0335063_0076207
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2070
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F031792	Metagenome	181	Y
F040479	Metagenome	161	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335063_0076207_1083_1334	F001477	GGAGG	MSNVYTIHPPKSDLILFYEVVEPDGSNTWGGANAEQCMQWLSLAPNGSRVLVSAWDSDEEDAHLVGQTIDVTEIIQEARKVGR
Ga0335063_0076207_1404_1703	F044984	GGAGG	MTDEIKKRVATAKRKNVRDRNYRRARDRALARLAHLYPDTYKQLLEMEKKQDELQGKKWISIDGTTVLTVGVHTRATGADDLAYASNAGENEGNDGGEA
Ga0335063_0076207_1808_2008	F040479	N/A	LLAQETLRANQEARLLELLNSLESVVDNLNFKSFTAYDTLVIAMEGVRVALSDTQIDEAGTDADRC
Ga0335063_0076207_364_570	F031792	GAGG	MGYEPELNDPVFYAGDYEEAVKCFRCGDTLDRDDIVWADEEGQIVKEGNDTAWCVVCLPSEGESNENA