Scaffold Ga0335063_0046918

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335063_0046918

Scaffold Ga0335063_0046918

Overview

Basic Information
Taxon OID	3300034111 Open in IMG/M
Scaffold ID	Ga0335063_0046918 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2733
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008078	Metagenome / Metatranscriptome	339	Y
F038230	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335063_0046918_2000_2236	F008078	N/A	MKQTPQKKAKFLFVHYHNLIQSIGGELDNETLICILAKQCALFEVRQILKEKWNIDVPGSEDEYGYWEEVEHEIESYE
Ga0335063_0046918_2229_2438	F038230	N/A	MNNKQNRNAYMREYMKRYRATMNEYTYKKIRERENHRLRAKYHAMTDEERQKYIEYQRTYHKLKQFTNE

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