NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0001266

Scaffold Ga0335063_0001266


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0001266 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15274
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016809Metagenome / Metatranscriptome244Y
F017132Metagenome242Y
F062456Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0001266_13525_14052F062456GGAMVNRIDALAHDDTNDRIIAKSFLENQGWWDIKLGGKYDLDLEVPKFKRGCDIEMINYGMDRFEKHNHFRIPVRKYKYWSELPTYKDKNENEKYNKYHDWYIDYIQFLNNDLTELLWYNWKTIKHYKDNLYIDNTLTKQWSERESSFITIPYNYIKEFSGIKHYKLINGLWTRQIN
Ga0335063_0001266_2552_2809F016809N/AMSKTNQEFMKQTMTGSIGGDEDYLYEQYIAQEQMNEEYWQWKSKQSHSIFPEGMEYDDEYYKSSYLPTPEEENENFKQVKQNGHT
Ga0335063_0001266_7921_8124F017132GGAMRKIETAKVGEDLYEIVKKLPIQRFTQEVTGEYAEALKKYYGVEKILKFHQTQEYLFVNKIDELEIF
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